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2018
New FCT and international funded projects supported by INCD in 2018. POCI-01-0145-FEDER-007679 "CICECO-INSTITUTO DE MATERIAIS DE AVEIRO" PTDC/AGR-TEC/1191/2014 "DEEPBIOREFINERY" H2020-EU.3.2.6 (668970) "PROcesses for Value added fibres by Innov...
2019
New FCT and international funded projects supported by INCD in 2019. UID/BIA/00329/2013 "CENTRE FOR ECOLOGY, EVOLUTION AND ENVIRONMENTAL CHANGES" Marie-Sklodowska Curie action MAPGenome (no. 799729) "MAPGenome: Mapping migration and adaptation in genomes"...
Period 2017-2019
Institution Number of different groups Universidade do Algarve 3 CCMAR 3 CBMR 1 CICECO 2 Universidade de Coimbra 3 BIOISI – Univ. Lisboa 3 Instituto Superior de Agronomia – Univ. Lisboa 2 Universidade Aberta 1 IST – Univ ...
Cloud Tutorials
Openstack Tutorials An Openstack Horizon/Dashboard tutorial can be found in these slides The Openstack CLI tutorial is being maitained in a github repository tutorial-oscli Older versions of the Openstack Tutorials: Openstack Command Line Tools materials Op...
udocker
Seminar Lightweight Virtualization, Seminar at IFT, Madrid, Spain <BR>materials UIMP School Integration of HPC resources and techniques, Santander Spain <BR>materials udocker Scientific Computing and Containers <BR> materials udocker Tutorial performin...
Documentos / Documents
Página web da INCD / INCD Web Site Português: www.incd.pt English: www.incd.pt Sobre a INCD / About INCD Contexto Diagramas/Context Diagrams (PDF) Modelo Organizacional/Organizational Model (PDF) Estatutos/Statutes (PDF) ATA nº1 Reunião de Sóc...
Login Machine
INCD-Lisbon ui6-lnec.a.acnca.pt
Directories and filesystem
CNCA-Lisbon The medusa cluster at CNCA-Lisbon (Cirrus-A) has the following Lustre filesystems. Lustre is a shared filesystem available both in the computing nodes and in the login nodes. Lustre is best suited for the storage of large/huge files. Summary Nam...
MATLAB
The MATLAB runtime compiler is available to the LNEC Medusa users. This software allows to use the Matlab compiled code in other machines without having Matlab installed. To use MATLAB in the Medusa cluster: load <name_of_the_module> matlab/R...
Job Queues
CNCA-Lisbon (Cirrus-A) Job queues available for LNEC users. List of Queues Name Jobs max elapsed time access Memory Max #cores[1] Comments medusa 18 days everyone 6 GB/Core 64 default queue for LNEC users fast_medusa 24 hours restricted[2] 3 GB/Core 3...
Dedicated resources
Cluster MEDUSA - Gorgon201: Servidores TYAN Servidores TYAN FT48B8812 em rede Ethernet (1 Gbit/s) 1 servidor, 32 cores, 8 GB de RAM por core (256 GB de RAM por servidor) 1 disco de 280 GB Servidores instalados com Scientific Linux 6, versão x86_64 pro...
Old wiki documentation
The old Medusa wiki page can be found here
Documentos / Documents
Marcos / Milestones
Atividade 1 / Activity 1 Mi1.1 - Internal coordination and administration structture fully operational Mi1.2 - First version of the internal management information system Mi1.3 - All specialised centres established Mi1.4 - Business and sustainability m...
Start here
Cluster specific information CNCA provides acess to several HPC computing clusters. The policies, limits and characteristics of these HPC clusters can be different, always check where you are running and whether the manuals and/or instructions are the correct ...
Slurm
Slurm's architecture Slurm is made of a slurmd daemon running on each compute node and a central slurmctld daemon running on a management node. Node In slurm a node is a compute resource, usually defined by particular consumable resources, i.e. cores, memor...
udocker Usage Example
Install by your own: See IBERGRID 2019 Tuturial, check also the general udocker tuturials page Use the already available installation: [user@pauli02 ~]$ module avail ------- /cvmfs/sw.el7/modules/soft ---------- gcc-5.5 matlab/R2018a trimm...
overview of the resources offered
sinfo : overview of the resources offered by the cluster By default, sinfo lists the available partitions name(s), availability, time limit, number of nodes, their state and the nodelist. A partition is a set of compute nodes. The command sinfo by default ...