AlphaFold
INCD Local Installation
The INCD team prepare a local installation of AlphaPhold using a container based on UDOCKER (instead of DOCKER) and includes the Genetic Database.
The local installation provide the AlphaFold version 2.1.1 over a container based on Ubuntu 18.04 distribution with cuda-11.0 and cudnn-8.
Environment
The environment is activate with command
$ module load udocker/alphaphold/2.1.1
this will activate automatically a virtual environment ready to start the AlphaFold container throught the python script run_udocker.py.
Data Base Location
The Genetic Database is installed bellow the filesystem directory /users3/data/alphafold on read-only mode, upgrades may be requested using the helpdesk@incd.pt address.